Friday, January 4, 2013

Rethinking bacterial persistence

Rethinking bacterial persistence [ Back to EurekAlert! ] Public release date: 3-Jan-2013
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Contact: Emmanuel Barraud
emmanuel.barraud@epfl.ch
41-796-283-642
Ecole Polytechnique Fdrale de Lausanne

Optofluidics allow for a new understanding of resistance to antibiotics

It's often difficult to completely eliminate a bacterial infection with antibiotics; part of the population usually manages to survive. We've known about this phenomenon for quite some time, dating back nearly to the discovery of penicillin. For more than 50 years, scientists have believed that the resistant bacteria were individuals that had stopped growing and dividing.

Up to now, in fact, it hasn't been possible to track the growth of cells before and after their exposure to antibiotics, which makes any analysis of the phenomenon quite imprecise. "Using microfluidics, we can now observe every bacterium individually, instead of having to count a population," says John McKinney, director of EPFL's Microbiology and Microsystems Laboratory (LMIC).

Active survivors

This new tool has revealed quite a few surprises. "We thought that surviving bacteria made up a fixed population that stopped dividing, but instead we found that some of them continued to divide and others died. The persistent population is thus very dynamic, and the cells that constitute it are constantly changing even though the total number of cells remains the same. Because they're dividing, the bacteria can mutate and thus develop resistance in the presence of the antibiotic," explains LMIC scientist Neeraj Dhar.

This point is extremely important. "We were able to eliminate a purely genetic explanation of the phenomenon," continues Dhar. In other words, "a population of genetically identical bacteria consists of individuals with widely varying behavior. Some of them can adapt to stressors that they have not previously encountered, thanks to the selection of persistent individuals. This could lead to a revision of the entire theory of adaptation," says McKinney.

Intermittent efficiency

The EPFL scientists were particularly interested in a relative of the tuberculosis bacterium. Their observations enabled them to formally challenge the argument that persistent bacteria are those that have stopped growing and dividing. "We were able to reveal the role of an enzyme whose presence is necessary in order for the antibiotic to work, and show that the bacilli produced this enzyme in a pulsatile and random manner," explains Dhar. "Our measurements showed that bacterial death correlated more closely with the expression of this enzyme than with their growth factor." The research is being published this week in Science magazine.

These conclusions could mark the beginning of a new theory of bacterial resistance, or perhaps even introduce a new view of how such resistance evolves. Further research is being done using other microorganisms, such as tuberculosis and E. coli bacteria. The persistence of some cancer cells to treatment could also be studied in a different manner. "It's a new approach for trying to figure out why some infections are so difficult to eliminate. The techniques we've developed for this study are now also being used to develop new antibiotics, in collaboration with pharmaceutical companies," says McKinney, adding that "it is the microengineering expertise at EPFL that has enabled us to create these innovative tools and open up new avenues for investigation."

###


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Rethinking bacterial persistence [ Back to EurekAlert! ] Public release date: 3-Jan-2013
[ | E-mail | Share Share ]

Contact: Emmanuel Barraud
emmanuel.barraud@epfl.ch
41-796-283-642
Ecole Polytechnique Fdrale de Lausanne

Optofluidics allow for a new understanding of resistance to antibiotics

It's often difficult to completely eliminate a bacterial infection with antibiotics; part of the population usually manages to survive. We've known about this phenomenon for quite some time, dating back nearly to the discovery of penicillin. For more than 50 years, scientists have believed that the resistant bacteria were individuals that had stopped growing and dividing.

Up to now, in fact, it hasn't been possible to track the growth of cells before and after their exposure to antibiotics, which makes any analysis of the phenomenon quite imprecise. "Using microfluidics, we can now observe every bacterium individually, instead of having to count a population," says John McKinney, director of EPFL's Microbiology and Microsystems Laboratory (LMIC).

Active survivors

This new tool has revealed quite a few surprises. "We thought that surviving bacteria made up a fixed population that stopped dividing, but instead we found that some of them continued to divide and others died. The persistent population is thus very dynamic, and the cells that constitute it are constantly changing even though the total number of cells remains the same. Because they're dividing, the bacteria can mutate and thus develop resistance in the presence of the antibiotic," explains LMIC scientist Neeraj Dhar.

This point is extremely important. "We were able to eliminate a purely genetic explanation of the phenomenon," continues Dhar. In other words, "a population of genetically identical bacteria consists of individuals with widely varying behavior. Some of them can adapt to stressors that they have not previously encountered, thanks to the selection of persistent individuals. This could lead to a revision of the entire theory of adaptation," says McKinney.

Intermittent efficiency

The EPFL scientists were particularly interested in a relative of the tuberculosis bacterium. Their observations enabled them to formally challenge the argument that persistent bacteria are those that have stopped growing and dividing. "We were able to reveal the role of an enzyme whose presence is necessary in order for the antibiotic to work, and show that the bacilli produced this enzyme in a pulsatile and random manner," explains Dhar. "Our measurements showed that bacterial death correlated more closely with the expression of this enzyme than with their growth factor." The research is being published this week in Science magazine.

These conclusions could mark the beginning of a new theory of bacterial resistance, or perhaps even introduce a new view of how such resistance evolves. Further research is being done using other microorganisms, such as tuberculosis and E. coli bacteria. The persistence of some cancer cells to treatment could also be studied in a different manner. "It's a new approach for trying to figure out why some infections are so difficult to eliminate. The techniques we've developed for this study are now also being used to develop new antibiotics, in collaboration with pharmaceutical companies," says McKinney, adding that "it is the microengineering expertise at EPFL that has enabled us to create these innovative tools and open up new avenues for investigation."

###


[ Back to EurekAlert! ] [ | E-mail | Share Share ]

?


AAAS and EurekAlert! are not responsible for the accuracy of news releases posted to EurekAlert! by contributing institutions or for the use of any information through the EurekAlert! system.


Source: http://www.eurekalert.org/pub_releases/2013-01/epfd-rbp123112.php

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India may suspend lawmakers facing sex crime charges - Metro News

NEW DELHI ? Indian lawmakers facing sexual assault charges could be suspended from office if the country?s top court rules in favour of a petition submitted after a gang-rape and murder that shocked the country.

Six state lawmakers are facing rape prosecutions and two national parliamentarians are facing charges of crimes against women that fall short of rape, said Jagdeep S. Chhokar, an official with the Association for Democratic Reforms, which tracks political candidate?s criminal records.

The petition will be heard Thursday, the same day police plan to formally charge six suspects in the attack on a 23-year-old university student in New Delhi two weeks ago.

The rape triggered outrage and sparked demands for stronger laws, tougher police action against sexual assault suspect and a sustained campaign to change society?s views on women.

As part of that campaign, Chief Justice Altamas Kabir agreed to hear a petition from retired government administrator Promilla Shanker asking the Supreme Court to suspend all national and state lawmakers who are facing prosecution for crimes against women.

She also asked the court to force the national government to fast-track thousands of rape cases languishing in India?s notoriously sluggish court system.

In the past five years, political parties across India nominated 260 candidates awaiting trial on charges of crimes against women, Chhokar said. Parties ran six candidates for the national parliamentary elections facing such charges, he said.

?We need to decriminalize politics and surely a serious effort has to be made to stop people who have serious charges of sexual assault against them from contesting elections,? said Zoya Hasan, a political analyst.

On Wednesday morning, several thousand women held a silent march to Gandhi?s memorial in the capital in memory of the victim, holding placards demanding ?Respect? and ?Justice.? Delhi Chief Minister Sheila Dikshit joined the women for a prayer session for the victim. The Gandhi memorial is a common protest site.

On Tuesday, the government set up a task force to monitor women?s safety in New Delhi and to review whether police were properly protecting women. Two task forces already are examining the handling of the rape case and possible changes in rape laws.

The rape of the unidentified woman on a bus in the capital has horrified many and brought unprecedented attention to the daily suffering of women here, who face everything from catcalls and groping to rapes.

Six men arrested in the case were to be formally charged Thursday with kidnapping, rape and murder, said Rajan Bhagat, the New Delhi police spokesman. Police have said they would push for the death penalty. Another suspect underwent medical testing to determine his age since juveniles cannot be charged with murder in India.

The Bar Association of lawyers last week decided against defending the six suspects because of the nature of the crime, although the court is expected to appoint attorneys to defend them.

Media reports say 30 witnesses have been gathered, and the charges have been detailed in a document running more than 1,000 pages. Police also have detained the owner of the bus used in the crime on accusation he used false documents to obtain permits to run the private bus service.

The family of the victim ? who died Saturday at a hospital in Singapore ? is struggling to come to grips with the tragedy.

?She was a very, very, very cheerful little girl and she was peace loving and she was never embroiled in any controversies like this. I don?t know why this happened to her,? her uncle, Suresh Singh, told The Associated Press on Wednesday.

The family of the victim, whose name was not revealed, called for stronger rape laws to prevent such attacks from happening again and demanded swift ? and harsh ? justice for woman?s assailants, Singh said.

?If the government can?t punish them, give the rapists to the people. The people will settle the scores with them,? he said.

___

Associated Press writer Biswajeet Banerjee contributed to this report from Lucknow.

Source: http://metronews.ca/news/world/493504/india-may-suspend-lawmakers-facing-sex-crime-charges/

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Thursday, January 3, 2013

HBT: Will Lackey become a fan favorite in Boston?

Pete Abraham of the Boston Globe has a list of Red Sox predictions for 2013. They?re a fun read, not because any of them will necessarily come to pass, but because so many of them are?so very Red Sox. Here?s one, however, that not a lot of people would bank on:

Fans will come to like John Lackey. Shane Victorino and Jonny Gomes, too. Lackey may not always say the right thing, but he goes about his business professionally and competes when he?s on the mound.

I get Gomes and Victorino. They annoy some folks, but generally not the fans of the teams for which they play.

Lackey, though, seems to have brought out so much ire among the fans and the Red Sox press. Way more than seems warranted based on his actions (hey, no one forced the Sox to give him that contract), but so much that it seems hard to imagine him becoming well-liked among the fans.

I guess anything is possible, but barring a Red Sox championship run ? which Abraham does not predict, as he believes there is too much ground to make up ? I feel like Lackey will be, at best, a sore reminder of a couple of bad seasons for the Sox.

?

Source: http://hardballtalk.nbcsports.com/2013/01/02/can-john-lackey-become-a-fan-favorite-in-boston/related/

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Wednesday, January 2, 2013

Concern over Oscar voting extends deadline

FILE - In this March 5, 2010 file photo, an Oscar statue stands on the red carpet outside the Kodak Theatre as preparations continue for the 82nd Academy Awards in Los Angeles, Calif. The motion picture academy says it's extending the deadline for members to vote for the Academy Awards to Jan. 4, 2013, following criticism of its new electronic voting system. The 85th annual Academy Awards are scheduled for Feb. 24, 2013. (AP Photo/Amy Sancetta, File)

FILE - In this March 5, 2010 file photo, an Oscar statue stands on the red carpet outside the Kodak Theatre as preparations continue for the 82nd Academy Awards in Los Angeles, Calif. The motion picture academy says it's extending the deadline for members to vote for the Academy Awards to Jan. 4, 2013, following criticism of its new electronic voting system. The 85th annual Academy Awards are scheduled for Feb. 24, 2013. (AP Photo/Amy Sancetta, File)

(AP) ? Growing concern that problems with the new electronic Oscar voting system could lead to record-low turnout has prompted the motion picture academy to extend the deadline for members to vote for Oscar nominations.

But with next week's highly anticipated announcements looming, the extension is only for a day, until Friday. The Academy of Motion Picture Arts and Sciences said Monday any votes received after the new deadline will not be counted.

"By extending the voting deadline we are providing every opportunity available to make the transition to online balloting as smooth as possible," said the academy's chief operating officer, Ric Robertson, in a statement. "We're grateful to our global membership for joining us in this process."

Reports of difficulty accessing the Oscars' first-ever online voting system and fears that it could be hacked have raised questions about balloting for the 85th annual contest. Earlier this year, the academy and its longtime accountants, PricewaterhouseCoopers, partnered with the electronic voting firm Everyone Counts Inc. to develop the system.

"There's considerable concern from many members that voter participation will be at record lows this year because the people who wanted to take a chance on this new cutting-edge system are either giving up on it or worried they won't be able to cast their votes," said Scott Feinberg, awards analyst and blogger for The Hollywood Reporter.

In the past, Oscar voting has been compiled strictly through paper ballots sent through the mail. The new system allows members to choose between voting online or sticking with a traditional mail-in ballot.

Morgan Spurlock, the documentary filmmaker whose 2004 film "Super Size Me" was nominated for best documentary, posted on Twitter last week that he wasn't able to log on to vote electronically and his ballot was instead mailed to him.

"The password they sent didn't work for my log-in ? and they couldn't email me a new log-in, only snail mail," tweeted the 42-year-old director.

The academy said it has made several voting resources available to members, including assisted voting stations in Los Angeles, New York and London, and a 24-hour support line.

A spokesman for Everyone Counts didn't immediately respond to a request seeking comment.

Besides online voting, a retooled nomination period could also affect the competition.

Organizers moved up the unveiling of the Oscar nominations to Jan. 10. That change puts the announcement three days before Hollywood's second-biggest awards ceremony, the Hollywood Foreign Press Association's Golden Globes, which are scheduled for Jan. 13.

Oscar overseers originally said the switcheroo would give the academy's nearly 6,000 members more time to see nominated films before the Feb. 24 awards ceremony, but Feinberg of The Hollywood Reporter noted that the change gave voters less time to see potential contenders during the first phase of voting, when members decide on nominees.

"If the turnout is lower among older members, more traditional Oscar contenders will probably receive fewer votes, and otherwise edgier films that appeal more to younger people could fare better," said Feinberg. "Because of the way that best-picture voting works, it could increase the chances of a movie like 'The Master' or 'Moonrise Kingdom' getting in."

Ultimately, because of the inherent secrecy involved in selecting Oscar winners, Feinberg said it will be impossible to know what effects ? if any ? this year's voting changes have on the ceremony, where as many as 10 films could be vying for the best-picture award.

___

Online:

http://www.oscars.org

___

Follow AP Entertainment Writer Derrik J. Lang on Twitter at http://www.twitter.com/derrikjlang.

Associated Press

Source: http://hosted2.ap.org/APDEFAULT/4e67281c3f754d0696fbfdee0f3f1469/Article_2013-01-01-Oscars-Voting/id-5765e379a9ed4a4280bdef6d3972b94f

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Dad Surprised With Christmas Puppy Has Adorably Child-Like Reaction (VIDEO)

Phillip Michaels wanted to do something special for his dad this Christmas, but he may not have realized just how excited his father would become when seeing the puppy he brought home.

Luckily, Michaels had his camera ready.

The video of his dad's lighting-fast transformation from man to small child is adorable, but his reaction is all the more touching considering the family lost their beloved dog a short time ago.

In fact, as Gawker notes, the new puppy, a cute and fluffy Havanese-Maltese mix, was from the very same shelter where they found their first dog 15 years before.

The video, which was posted to YouTube on Jan. 1, has already garnered more than 314,000 views. The post also received more than 12,000 upvotes on social news site Reddit.

According to the online forum, the family, which hails from Queens, New York, settled on Monty for the puppy's name.

"[We] went back and forth a little because I was thinking of Woodstock because he had that funky little hairdo and the beady black eyes," Michaels wrote. "Reminded me of Woodstock from the Peanuts."

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Source: http://www.huffingtonpost.com/2013/01/02/dad-surprised-christmas-puppy-reaction-video_n_2397230.html

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5 issues small business owners face in 2013 | GoErie.com/Erie ...

Lawmakers have been haggling over what's called the "fiscal cliff," the combination of billions of dollars in tax increases and budget cuts. Even if Congress reaches an agreement, small-business owners won't have the certainty they need, according to Todd McCracken, president of the National Small Business Association, a group that lobbies on behalf of small companies.
One of the most important tax provisions for small businesses, what's known as the Section 179 deduction, will shrink to $25,000 in 2013 from $125,000 in 2012. The deduction, which applies to equipment purchases, was $500,000 in 2011.

HEALTH CARE
Health care has been another source of uncertainty for small-business owners. The new year will bring some, but probably not all, of the answers to questions about how the new health-care law will affect them.
"They'll have to get their arms around the law, look at their options, learn more about the exchanges," says John Arensmeyer, CEO of Small Business Majority, a lobbying group.
Under the law, companies with 50 or more employees will be required to provide affordable health-care insurance for their employees starting Jan. 1, 2014. During 2013, federal and state health insurance exchanges will be set up, and owners will be able to see how much it will cost them to buy insurance.

LENDING
Don't look for the small-business lending climate to get easier in 2013. Owners who are uneasy about the economy, taxes and health care aren't expected to significantly increase their borrowing.
Depressed lending levels may be with us well beyond 2013, says James Schrager, a professor of entrepreneurship at the University of Chicago Booth School of Business.
The problem isn't just that banks are cautious about small-business loans. Schrager notes that home equity loans, a traditional source of money for people starting or expanding a business, remain difficult to get, the result of the collapse in the mortgage market in 2008.

SKILLED WORKER SHORTAGE
While companies' caution has weighed on the job market, many company owners who actually want to hire say it's hard to find workers to fill some positions.
It's becoming more difficult to find people who have the skills they need, these owners say. Many new manufacturing jobs require high-tech skills. They include positions at factories where computers are used to create products like airplane parts and machinery. And some require several years of training, says Shane, the Case Western Reserve professor.

Source: http://www.goerie.com/article/20130101/BUSINESS05/301019946/5-issues-small-business-owners-face-in-2013

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Tuesday, January 1, 2013

The Internet ? Philosophy Prime

It is not proper to speak of ?the internet? as some kind of disembodied entity that will doom or charm us all.

For one thing, even if using the internet a lot in some ways is deleterious, to blame ?the internet? rather than perhaps looking at the behavioral patterns of users too would be pretty silly if not just plain dumb.

Socially conservative idealists seem to always come out of the woodwork when one begins to talk about the internet.? Oh, we?re losing our humanity!? I mean is this a joke?? Did hugging their wives and kids make Nazis nicer people?? Oh the good old days with Genghis Khan and his merry band of bros, their intimate social connections kept them all happier and more civil.? It?s just more Luddite propaganda.? The usual reaction of humanists who are afraid to admit all the nastiness lurking in those people around them.? No we can?t blame people themselves, it?s the internet, it?s technology, it?s ideology, it?s environment.

The internet is among the greatest human achievements to date.? Yes, there is going to be a learning curve.? But don?t worry..people are already hussying the internet up as quickly as they can.? What began as a coolly abstract basic info interface is now more and more about the social, about style, and so on.

The worst thing about these Luddites is their idealization of the ?good old days? of community.? I admit I have from time to time indulged in some of this romanticism myself, but I know that it?s really a bunch of horseshit.? Communities may be places where one finds great support?.if one is ?one of us?.

Communities and intimate social connections are also places one finds extreme conformity, nasty hierarchy, industrial ostracization, malignant conservatism, insidious cruelty, petty control of power and information, the demonization of ?the other?, stunted diversity, and on and on.

In fact, the greatest geniuses in history have often had a tendency towards isolation or extreme selectivity in camaraderie.

It may be that many people just can?t control themselves with all the instant gratification now available.? Just as homo sapiens, creatures of scarcity, overindulged as soon as they had easy food surplus..perhaps porn, vapid entertainment, etc..are the same way.? Maybe it?s just too hard to resist for most of us.

Maybe..to some extent.? We?ll survive, tho.

The internet is not preventing people from having friendly get-togethers or from forming communities.

If anything ? it?s exposing how vapid the old time romanticism about those communities and relationships really is!? With the internet you no longer have to settle for what?s next door.? Yes, that romantic notion of family and marriage and so on may seem less romantic when contrasted with more compelling alternatives.? Shrug.? One can take things for granted?one can also fail to realize the possibilities one is missing out on.

I know that healthy and intimate relationships are irreplaceable.? But I also know that people romanticize the hell out of them and tend to..I believe?.really exaggerate their importance in some instances.(Even as such importance is likely underestimated in other instances)? People always have this notion of a city on a hill, the family on the grassy knoll?but these things are much rarer and less perfect than is typically admitted.? Arts and entertainment have massive biases in favor of idealization of these sorts of things?esp modern instant gratification verse chorus verse sugary moral of the story kind of carp.

What?s truly good is unlikely to ever go completely out of style.

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Source: http://philosophyprime.wordpress.com/2012/12/31/the-internet/

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